Title: Gene Annotation from Scientific Literature Using Mappings between Keyword
نویسندگان
چکیده
keywords MeSH terms GO terms
منابع مشابه
Gene annotation from scientific literature using mappings between keyword systems
MOTIVATION The description of genes in databases by keywords helps the non-specialist to quickly grasp the properties of a gene and increases the efficiency of computational tools that are applied to gene data (e.g. searching a gene database for sequences related to a particular biological process). However, the association of keywords to genes or protein sequences is a difficult process that u...
متن کاملAn Approach to Mine Textual Information From Pubmed Database
The web has greatly improved access to scientific literature. A wide spectrum of research data has been created and collected by researchers. However, textual information on the web are largely disorganized, with research articles being spread across archive sites, institution sites, journal sites and researcher homepages. Data was widely available over internet and many kinds of data pose the ...
متن کاملThe Annotation-enriched non-redundant patent sequence databases
The EMBL-European Bioinformatics Institute (EMBL-EBI) offers public access to patent sequence data, providing a valuable service to the intellectual property and scientific communities. The non-redundant (NR) patent sequence databases comprise two-level nucleotide and protein sequence clusters (NRNL1, NRNL2, NRPL1 and NRPL2) based on sequence identity (level-1) and patent family (level-2). Anno...
متن کاملPubSearch and PubFetch: a simple management system for semiautomated retrieval and annotation of biological information from the literature.
For most systems in biology, a large body of literature exists that describes the complexity of the system based on experimental results. Manual review of this literature to extract targeted information into biological databases is difficult and time consuming. To address this problem, we developed PubSearch and PubFetch, which store literature, keyword, and gene information in a relational dat...
متن کاملFunctional gene clustering via gene annotation sentences, MeSH and GO keywords from biomedical literature
Gene function annotation remains a key challenge in modern biology. This is especially true for high-throughput techniques such as gene expression experiments. Vital information about genes is available electronically from biomedical literature in the form of full texts and abstracts. In addition, various publicly available databases (such as GenBank, Gene Ontology and Entrez) provide access to...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
عنوان ژورنال:
دوره شماره
صفحات -
تاریخ انتشار 2004